Malignant Lymphomas |
1 Department of Molecular and Developmental Genetics, VIB, Leuven, Belgium;
2 Department of Human Genetics, K.U. Leuven, Leuven, Belgium;
3 Bioinformatics Group, Department of Electrical Engineering, K.U. Leuven, Leuven, Belgium;
4 Department of Pathology, University Hospitals K.U. Leuven, Leuven, Belgium;
5 Department of Hematology, University Hospitals K.U. Leuven, Leuven, Belgium;
6 Department of Pathology, The Norwegian Radium Hospital, University of Oslo, Oslo, Norway and
7 Department of Microbiology and Immunology, Rega Institute for Medical Research, K.U. Leuven, Leuven, Belgium
Correspondence: Patrick Matthys, Rega Institute for Medical Research, K.U. Leuven, Minderbroedersstraat 10, B-3000 Leuven, Belgium. E-mail: Patrick.Matthys{at}rega.kuleuven.be, or Chris De Wolf-Peeters, Department of Pathology, University Hospitals K.U. Leuven, Minderbroedersstraat 12, B-3000 Leuven, E-mail: Christiane.Peeters{at}uz.kuleuven.be
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Design and Methods: We collected 33 cases of T-cell/histiocyte-rich large B-cell lymphoma and 56 cases of nodular lymphocyte-predominant Hodgkins lymphoma and performed microarray gene expression profiling on ten cases of each lymphoma, to obtain a better understanding of the lymphoma host response. By quantitative reverse transcriptase polymerase chain reaction we verified that these 20 selected cases were representative of the entire population of T-cell/histiocyte-rich large B-cell and nodular lymphocyte-predominant Hodgkins lymphomas.
Results: We observed that the microenvironment in nodular lymphocyte-predominant Hodgkins lymphoma is molecularly very similar to a lymph node characterized by follicular hyperplasia, while the microenvironment in T-cell/histiocyte-rich large B-cell lymphoma is clearly different. The T-cell/histiocyte-rich large B-cell lymphoma signature is hallmarked by up-regulation of CCL8, interferon-
, indoleamine 2,3 dioxygenase, VSIG4 and Toll-like receptors. These features may be responsible for the recruitment and activation of T cells, macrophages and dendritic cells, characterizing the stromal component of this lymphoma, and may point towards innate immunity and a tumor tolerogenic immune response in T-cell/histiocyte-rich large B-cell lymphoma.
Conclusions: The gene expression profile of T-cell/histiocyte-rich large B-cell lymphoma, in comparison with that of nodular lymphocyte-predominant Hodgkins lymphoma, shows features suggestive of a distinct tolerogenic host immune response that may play a key role in the aggressive behavior of this lymphoma, and that may serve as a potential target for future therapy.
Key words: gene expression profiling, Hodgkins lymphoma, THRLBCL.
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The precise relationship between THRLBCL and NLPHL remains unclear.2,3,9 Indeed, the atypical B cells of NLPHL and THRLBCL share many characteristics, including expression of pan-B-cell markers, germinal center B-cell origin and common chromosomal imbalances.8,10–12 Recently, genome-wide analysis of isolated tumor cells from NLPHL and THRLBCL revealed further similarities between the tumors cells of the two lymphomas.13 Despite the similarities of their malignant cells, an important difference between the two lymphomas lies in their clinical presentation and prognosis. THRLBCL is a very aggressive disorder, which often does not respond to therapy.7 Patients with THRLBCL frequently present with stage III or IV disease, splenomegaly, hepatomegaly and bone marrow involvement. In contrast, NLPHL is an indolent disorder. Most patients are diagnosed at an early stage of disease and have a good prognosis.14
Gene expression profiling of lymphomas clearly illustrated that apart from the characteristics of the tumor cells, the microenvironment of the tumor also defines the profile of the lymphoma, and, more importantly, plays a role in predicting the prognosis.15,16 In the present study, we used gene expression profiling on full tissue sections to evaluate the profile of the microenvironment as a marker that identifies THRLBCL and NLPHL as two distinct entities.
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From the Leuven series, we randomly selected ten typical NLPHL and ten typical THRLBCL cases for microarray expression profiling. Finally, a pool of five reactive lymph node biopsies, characterized by follicular hyperplasia, was constructed for use as reference tissue. Most lymphoma cases were included in one of our previous studies on NLPHL and/or THRLBCL.3,7,8,12,19
This study was approved by the local ethical commissions of the University Hospitals K.U. Leuven.
RNA extraction
Total RNA was extracted from 20 micron sections of each frozen tissue sample using the TriZol reagent (Invitrogen, Merelbeke, Belgium), followed by purification using an RNeasy mini kit (Qiagen, Venlo, The Netherlands), according to the manufacturers recommendations. RNA quality and concentration were measured using a Nanodrop spectrophotometer (Nanodrop Technologies, Wilmington, DE, USA).
Gene expression profiling
Five micrograms of RNA were biotin-labeled and hybridized onto human oligonucleotide microarrays (Affymetrix HG-U133 Plus 2.0; Affymetrix, High Wycombe, UK). The resulting data are available online at the Gene Expression Omnibus (www.ncbi.nlm.nih.gov/projects/geo/), accession number GSE7788. These data were analyzed using Bioconductor software.20 Statistical testing for genes differentially expressed between the two types of lymphomas was done by a t-test. Corrections for multiple testing were made using a step-down maxT procedure.21
The statistical significance of overlap with other expression profiling studies was calculated using hypergeometric statistics.
Immunohistochemistry
Apart from the immunohistochemical stains used for diagnostic purposes, including CD20, CD3, CD4, CD8, CD23 and CD57 stain, paraffin-embedded sections were stained with a commercially available mouse anti-indoleamine 2,3 dioxygenase (IDO) monoclonal antibody (Chemicon International) and a rabbit anti-STAT1 polyclonal antibody (STAT1 p84/p91, Santa Cruz Biotechnology), following the manufacturers recommendations.
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Table 1. Clinical data.
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Figure 1. Expression profiling of NLPHL and THRLBCL. (A) Principal component analysis, performed on the complete microarray data (54675 probe sets) of ten NLPHL cases, ten THRLBCL cases, and a reference pool of lymph nodes with follicular hyperplasia. Blue: NLPHL; red: THRLBCL; green: reactive lymph node pool. The first principal component (separating NLPHL from THRLBCL) captured 42% of the total variance. The second principal component captured 11% of the total variance. (B) Heat map of the 874 differentially expressed probesets (527 unique genes, Online Supplementary Table S1). Top: cluster dendrogram, showing the a priori expected separation between the THRLBCL and NLPHL samples, and confirming the similarity between NLPHL and the reactive lymph node reference; middle: identity of samples (colors as in A); bottom: graphical representation of gene expression (blue: high expression; red: low expression). (C) Expression of three selected genes, measured by real-time quantitative PCR, in 55 in-house (left) and 14 external (right) THRLBCL and NLPHL cases. Colors as in A.
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Finally, we validated the obtained gene expression data by real-time quantitative reverse transcriptase polymerase chain reaction (RT-PCR) (Online Supplementary Design and Methods), obtaining similar results (Online Supplementary Table S2).
T-cell/histiocyte-rich large B-cell lymphoma and nodular lymphocyte-predominant Hodgkins lymphoma gene expression signatures in additional cases
As we observed large differences between the expression profiles of NLPHL and THRLBCL, we wondered whether a simple and intuitive view of gene expression in these lymphomas, based on real-time quantitative RT-PCR measurements of a very limited number of genes, would be able to discriminate additional cases of the two entities. We, therefore, selected three genes from the gene expression signatures and assayed these in 69 additional cases of NLPHL and THRLBCL (both in-house and external), based on quantitative RT-PCR measurements (see Online Supplementary Design and Methods and Online Supplementary Table S3). Using only the expression values for these three selected genes, THRLBCL and NLPHL presented as two distinct groups (Figure 1C). These results further confirmed that the NLPHL and THRLBCL cases selected for microarray expression analysis were representative of the two lymphoma entities.
The gene expression signature of nodular lymphocyte-predominant Hodgkins lymphoma: a predominance of B-cell genes
In comparison with the gene expression profile of THRL-BCL, the expression signature of NLPHL comprises mainly genes characteristic of B cells (Table 2A, Online Supplementary Table S1A), in line with the morphological findings. Moreover, the observed similarities between the expression profiles of NLPHL and the reactive lymph nodes, characterized by follicular hyperplasia, suggest that the components of the B follicle play a major role in both profiles. This predominance of B cells in the NLPHL microenvironment was confirmed by immunohistochemical staining for CD20, a B-cell marker (Figure 2 and Table 3). In line with these findings, the NLPHL signature shows significant overlap with the signature Monti et al.16 found to be related to B-cell receptor/proliferation in a subgroup of DLBCL (of the 43 genes in the B-cell receptor/proliferation signature present on our microarray platform, 7 were a part of the NLPHL signature, P=4.4x10–8; Online Supplementary Table S4A). In contrast, the overlap with the oxidative phosphorylation signature and host response signature of Monti et al.16 was not more than would be randomly expected (2 genes and 0 genes, respectively).
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Table 2A. A selection of genes differentially expressed between NLPHL and THRLBCL (P<0.001), expressed at higher levels in NLPHL.
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Figure 2. Representative pictures of the hematoxylin and eosin (A, E), CD20 (B, F), STAT1 (C, G) and IDO (D, H) stains on NLPHL (A–D) and THRLBCL (E–H), all taken with a 40X objective. (A) Atypical cells (popcorn cells) in NLPHL embedded in a background rich in small lymphocytes. (B) CD20 expression by a popcorn cell surrounded by CD20-negative lymphocytes, resulting in a T-cell rosette embedded in CD20-positive small B cells. (C) STAT1 is weakly expressed by most popcorn cells in the nucleus and in the cytoplasm, in some of the small lymphocytes and in large dendritic cells adjacent to the T-cell rosettes. (D) Popcorn cells, as well as surrounding lymphocytes do not express IDO, while some plasma cell-like, non-dendritic cells express IDO in their cytoplasm and in their nucleus. These IDO-positive cells might correspond to plasmacytoid monocytes/plasmacytoid dendritic cells. (E) The atypical cells of THRLBCL, embedded in a stroma rich in histiocytes and a limited number of small lymphocytes. (F) CD20 expression by the tumor cells, and absence of small CD20+ lymphocytes in the surrounding stroma. (G) Most of the stromal components of THRLBCL express STAT1, while the tumor cells are clearly negative. (H) IDO is expressed in small plasma cell-like cells in THRLBCL, assumed to correspond to plasmacytoid monocytes/plasmacytoid dendritic cells (as in NLPHL). In addition, large dendritic cells frequently located nearby tumor cells also clearly express IDO in all of the THRLBCL (and none of the NLPHL) cases.
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Table 3. Summary of the immunohistochemical findings of the composition of the microenvironement within the tumor areas in the ten cases each of THRLBCL and NLPHL used for gene expression profiling.
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The gene expression signature of T-cell/histiocyte-rich large B-cell lymphoma: a crucial role for interferon-
and innate immune responses
The THRLBCL signature underlines the crucial role of an IFN-
regulated and tolerogenic pathway within the microenvironment. Indeed, IFN-
is up-regulated in THRL-BCL (Online Supplementary Table S2), as are several genes encoding for proteins that are up-regulated in macrophages and dendritic cells upon treatment with IFN-
.22,23 (Table 2B, Online Supplementary Table S1B), indicative of an activated macrophage status. These genes include those encoding for STAT1, Fc-
receptor I (FcRI or CD64), ICAM-1, IFN-
induced protein (IP-10/CXCL10), CXCL16 and, in particular, CCL8 and IDO (Table 2B, Online Supplementary Table S1B). CCL8, also designated as monocyte chemotactic protein 2 (MCP2), belongs to the CC chemokines. It is strongly induced by IFN-
24 and is one of the most potent chemoattractants for mononuclear cells, including monocytes and T cells.22 Thus, CCL8 may contribute to the histiocyte-rich (and T-cell rich) composition of the microenvironment in THRLBCL. IFN-
also promotes, in a STAT1-dependent way, the induction of the tryptophan-degrading enzyme IDO in monocytes, macrophages and dendritic cells.25,26 Interestingly, both B7-1 (CD80) and B7-2 (CD86) were part of this signature, and through a reverse interaction with CTLA4, these membrane proteins have been shown to activate IDO expression, as reviewed by Munn and Mellor.27 IDO has been described to promote tumor immune tolerance by suppressing local T-cell responses and by altering the conversion of effector T cells into T regulatory cells.28,29 Intriguingly, VSIG4 (V-set and Ig domain-containing 4, also known as Z39Ig), one of the most significant and strongly up-regulated genes of the THRLBCL signature, is a B7 family-related protein expressed by macrophages and dendritic cells and acts as a strong negative regulator of CD4 and CD8 T-cell activation in vitro and in vivo.30 Thus, together with IDO, VSIG4 may contribute to a state of immune suppression and tumor tolerance. Of interest, aside from its suppressive properties on T cells, VSIG4 has also been recognized as a new complement receptor of the immunoglobulin superfamily (CRIg), required for phagocytosis of circulating pathogens.31 In line with this finding, the THRLBCL signature includes scavenger receptors (CXCL16, MSR1, CD163) and Toll-like receptors (TLR1, TLR2, TLR4 and TLR8). These data are indicative of innate immune responses in THRLBCL. A possible involvement of pathogens in the initiation or propagation of the disease cannot, therefore, be excluded and should be further investigated.
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Table 2B. A selection of genes differentially expressed between NLPHL and THRLBCL (P<0.001), expressed at higher levels in THRLBCL.
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Remarkably, nine genes of our THRLBCL signature were also found to be up-regulated in microdissected lymphoma cells in NLPHL compared to in normal B cells and in B-cell non-Hodgkins lymphoma (P=8.5x10–11, Online Supplementary Table S4E), and four genes of our THRLBCL signature were found to be up-regulated in microdissected lymphoma cells in NLPHL versus classical Hodgkins lymphoma (and germinal center B cells)13 (P=5.4x10–5, Online Supplementary Table S4F). One of these genes is STAT1, a signal transducer and activator of transcription factors in response to interferons. In order to find an explanation for this apparent discrepancy, we performed immunohistochemistry for STAT1 (and other markers) on THRLBCL and NLPHL tissue sections. A representative stain is shown in Figure 2 and a summary is listed in Table 3. Staining for STAT1 revealed that in THRLBCL almost all stromal cells were positive, whereas in NLPHL STAT1 staining was restricted to dendritric cells (in close vicinity to the T-cell rosettes around the tumor cells) and to the tumor cells itself. The STAT1-positive cells in NLPHL may correspond to the STAT1-positive cells described in a subpopulation of follicular lymphomas.32 The differences in staining pattern that we found between THRLBCL and NLPHL may explain the increased STAT1 gene expression in THRLBCL versus NLPHL, as well as the upregulation of the STAT1 gene in NLPHL in the study by Brune et al.13
When sections were stained for IDO, we observed strongly IDO-positive dendritic-like cells in THRLBCL, in close contact with small lymphocytes and/or tumor cells (Figure 2). These IDO-positive dendritic cells are not present in NLPHL. IDO-positive, round, medium-sized cells are found in both NLPHL and THRLBCL sections (Table 3). Based on their phenotype (CD68+, IDO+) these cells might be considered plasmacytoid monocytes or plasmacytoid dendritic cells.
Absence of T-cell genes in the nodular lymphocyte-predominant Hodgkins lymphoma and T-cell/histiocyte-rich large B-cell lymphoma gene expression signatures
Neither the NLPHL nor the THRLBCL gene expression signature contained a significant component of T-cell-associated genes. As shown in Online Supplementary Table S5, the absence of T-cell genes in this comparison is not due to our strict statistical cut-off, as even with a cut-off of P<0.05 after correction for multiple testing, none of the tested T cell-associated genes showed a significant difference. In addition, the ratio between CD4+ and CD8+ T cells, described to change in favor of the CD8+ cells in THRLB-CL8,33 was not reflected in the expression profiles either, although we did observe a (non-significant) tendency towards a higher expression of CD8
(Online Supplementary Table S5). These findings are in line with the immunohistochemical staining data we obtained for CD3, CD4 and CD8 (Table 3). Apart from a difference in the number of T cells within the tumor nodules, as previously described,34,35 all NLPHL cases comprised residual non-neoplastic T-cell areas. Furthermore, CD57 expression is described as a typical feature of the T cells surrounding the tumor cells in NLPHL, but the number of CD57+ T cells present in NLPHL is variable and CD57+ T cells are also found in THRLBCL.8,33 Our immunohistochemical data revealed similar results (Table 3). Thus, the absence of T-cell-associated genes in the THRLBCL expression signature might be regarded as a confirmation that it is not the T cells, but rather the macrophages/histiocytes that represent the functionally important component of the microenvironment in THRLBCL.
A host immune tolerogenic microenvironment in T-cell/histiocyte-rich large B-cell lymphoma as an explanation for the bad prognosis of patients with this lymphoma?
Tumor cells in general have acquired several mechanisms to escape from immune surveillance by immunocompetent cells. In both THRLBCL and NLPHL, the tumor cells produce proteins that counteract the activity of cytotoxic lymphocytes and NK cells.13 Together with their regulation of genes that are involved in inhibition of cell proliferation and programmed cell death, lymphoma cells can, therefore, continue to grow and escape immune attack. However, in addition to such a tumor-induced immune escape, we demonstrate here that the microenvironment of THRLB-CL, in comparison with that of NLPHL, is hallmarked by a distinct tolerogenic host immune response that may play a key role in the aggressive behavior of the former lymphoma. As schematically represented in Figure 3, we speculate that CCL8 and IFN-
are responsible for, respectively, the recruitment and the activation of monocytes, macrophages and dendritic cells and, in synergy with TLR-ligands, for the production of high levels of IDO and VSIG4. IDO is at least partly produced by dendritic cells, a subpopulation of the numerous histiocytes characterizing the THRLBCL stroma. These dendritic cells are intensely stained by IDO immunohistochemistry, are in proximity of the tumor, and were not found in NLPHL (Figure 2). We speculate that it is this production of IDO and VSIG4 that results in a tolerogenic microenvironment of the tumor cells. This hypothesis, derived from observational data, could explain the bad prognosis of THRLBCL patients, but further investigation is required to pinpoint one of these mediators (CCL8, IFN-
, IDO, VSIG4) as a novel target for therapy in the aggressive THRLBCL. Such investigations could include analysis of T-cell proliferation (from peripheral bone marrow cells of THRLBCL patients) upon challenge with lymphoma tissue samples, in the presence or absence of IFN-
, IDO and VSIG4 inhibitors. In addition, a severe combined immunodeficiency xenograft mouse model might be of great value for evaluating the efficacy of these inhibitors on lymphoma tumor growth and lymphadenopathy.
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Figure 3. Schematic proposal of the host immune response in THRLBCL, based on our morphological and gene expression data, and on literature evidence. By morphology, the microenvironment of THRLBCL is hallmarked by the presence of histiocytes/macrophages. Gene expression profiling data confirm the central role of macrophages and/or dendritic cells and suggest that these cells may be recruited by CCL8.22,24 IFN- activates these cells to produce IDO.25,26 High levels of IDO, together with VSIG4, suppress the proliferation of effector T cells (such as CD8+ cytotoxic T cells), resulting in tumor tolerance.28,30 Macrophages and dendritic cells also express receptors involved in innate immunity, including scavenger and Toll-like receptors, and VSIG4 as a complement receptor.31 Blocking the production and/or the function of CCL8, IFN- , and in particular IDO and VSIG4 may abrogate the induction of tumor tolerance. It is encouraging to note that inhibitors to target IDO are available.36
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The online version of this article has a Supplementary Appendix.
All authors meet the criteria for being contributing authors. PVL, PeterM, PatrickM and CDW-P designed the study; PVL, TT, VV, DD, AM, IVB, GV, JD and CDW-P collected data; PVL, TT, PatrickM and CDW-P analyzed and interpreted data; PVL performed the statistical analysis; PVL, TT, VV, PatrickM and CDW-P drafted the manuscript. All authors were involved in the discussion and all approved the final version of the manuscript.
The authors reported no potential conflicts of interest.
Funding: this work was supported by a Concerted Research Action Grant from the K.U. Leuven (Peter M) and grant G.05.28.06 from the Research Foundation – Flanders (FWO) (CDW-P). PVL is supported by a postdoctoral fellowship of the Research Foundation – Flanders (FWO).
Received for publication April 1, 2009. Revision received July 17, 2009. Accepted for publication August 10, 2009.
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